STRINGSTRING
RB2654_00060 protein (Maritimibacter alkaliphilus) - STRING interaction network
"RB2654_00060" - Transcriptional regulator, MarR family protein in Maritimibacter alkaliphilus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2654_00060Transcriptional regulator, MarR family protein (114 aa)    
Predicted Functional Partners:
RB2654_00045
Uncharacterized protein (412 aa)
 
          0.629
RB2654_00210
Uncharacterized protein (464 aa)
   
          0.572
RB2654_00055
Putative ferredoxin (110 aa)
 
          0.519
RB2654_00275
Acyl-CoA synthase (471 aa)
   
          0.499
RB2654_15195
Uncharacterized protein (934 aa)
   
          0.483
RB2654_00160
Pca operon transcriptional activator PcaQ (134 aa)
   
          0.474
RB2654_00040
Uncharacterized protein (102 aa)
   
          0.467
RB2654_00050
Uncharacterized protein (99 aa)
              0.438
RB2654_16406
Lysozyme (314 aa)
   
          0.428
RB2654_00325
Universal stress protein family domain protein (274 aa)
   
          0.402
Your Current Organism:
Maritimibacter alkaliphilus
NCBI taxonomy Id: 314271
Other names: M. alkaliphilus, M. alkaliphilus HTCC2654, Maritimibacter, Maritimibacter Lee et al. 2007, Maritimibacter alkaliphilus, Maritimibacter alkaliphilus HTCC2654, Maritimibacter alkaliphilus Lee et al. 2007, Maritimibacter alkaliphilus str. HTCC2654, Maritimibacter alkaliphilus strain HTCC2654, Rhodobacterales bacterium HTCC2654
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