STRINGSTRING
RB2654_00915 protein (Maritimibacter alkaliphilus) - STRING interaction network
"RB2654_00915" - RNA polymerase sigma-70 factor in Maritimibacter alkaliphilus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2654_00915RNA polymerase sigma-70 factor (179 aa)    
Predicted Functional Partners:
RB2654_00920
Uncharacterized protein (225 aa)
 
          0.979
RB2654_00925
Uncharacterized protein (184 aa)
 
          0.804
RB2654_13785
Transcriptional activator, putative (216 aa)
     
 
  0.774
RB2654_19223
Uncharacterized protein (187 aa)
 
          0.627
RB2654_00910
Cobalt chelatase, CobS subunit (328 aa)
              0.621
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1415 aa)
       
 
  0.587
RB2654_03909
Multisensor hybrid histidine kinase (800 aa)
     
 
  0.551
RB2654_08397
Beta-Ig-H3/Fasciclin (166 aa)
 
          0.520
RB2654_00905
Uncharacterized protein (332 aa)
              0.495
RB2654_13795
Uncharacterized protein (429 aa)
 
          0.484
Your Current Organism:
Maritimibacter alkaliphilus
NCBI taxonomy Id: 314271
Other names: M. alkaliphilus, M. alkaliphilus HTCC2654, Maritimibacter, Maritimibacter Lee et al. 2007, Maritimibacter alkaliphilus, Maritimibacter alkaliphilus HTCC2654, Maritimibacter alkaliphilus Lee et al. 2007, Maritimibacter alkaliphilus str. HTCC2654, Maritimibacter alkaliphilus strain HTCC2654, Rhodobacterales bacterium HTCC2654
Server load: low (11%) [HD]