STRINGSTRING
RB2654_07950 protein (Maritimibacter alkaliphilus) - STRING interaction network
"RB2654_07950" - Uncharacterized protein in Maritimibacter alkaliphilus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2654_07950Uncharacterized protein (234 aa)    
Predicted Functional Partners:
RB2654_22978
Uncharacterized protein (279 aa)
   
          0.648
RB2654_07955
TPR domain protein (178 aa)
              0.642
RB2654_22973
Uncharacterized protein (543 aa)
   
          0.623
RB2654_22288
Uncharacterized protein (162 aa)
   
          0.576
RB2654_17916
Uncharacterized protein (244 aa)
   
          0.504
RB2654_06909
Uncharacterized protein (114 aa)
   
          0.504
RB2654_08552
Uncharacterized protein (219 aa)
   
          0.502
RB2654_01855
Possible transcriptional regulator, TetR family protein (206 aa)
   
          0.501
RB2654_07960
Rhomboid family protein (244 aa)
              0.490
cas9
CRISPR-associated endonuclease Cas9 ; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this pro [...] (997 aa)
   
          0.460
Your Current Organism:
Maritimibacter alkaliphilus
NCBI taxonomy Id: 314271
Other names: M. alkaliphilus, M. alkaliphilus HTCC2654, Maritimibacter, Maritimibacter Lee et al. 2007, Maritimibacter alkaliphilus, Maritimibacter alkaliphilus HTCC2654, Maritimibacter alkaliphilus Lee et al. 2007, Maritimibacter alkaliphilus str. HTCC2654, Maritimibacter alkaliphilus strain HTCC2654, Rhodobacterales bacterium HTCC2654
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