STRINGSTRING
RB2654_11213 protein (Maritimibacter alkaliphilus) - STRING interaction network
"RB2654_11213" - Uncharacterized protein in Maritimibacter alkaliphilus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2654_11213Uncharacterized protein (236 aa)    
Predicted Functional Partners:
RB2654_18958
Uncharacterized protein (333 aa)
   
          0.662
RB2654_14800
Uncharacterized protein (80 aa)
   
          0.590
RB2654_20183
Acyl carrier protein (87 aa)
   
          0.557
RB2654_16786
Uncharacterized protein (855 aa)
   
          0.509
rplC
50S ribosomal protein L3 ; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (290 aa)
              0.494
rplD
50S ribosomal protein L4 ; Forms part of the polypeptide exit tunnel (205 aa)
              0.494
rplW
50S ribosomal protein L23 ; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome (98 aa)
              0.494
RB2654_02934
Uncharacterized protein (238 aa)
   
          0.483
rpsJ
30S ribosomal protein S10 ; Involved in the binding of tRNA to the ribosomes (104 aa)
              0.475
RB2654_20188
3-oxoacyl-(Acyl carrier protein) synthase (369 aa)
   
          0.436
Your Current Organism:
Maritimibacter alkaliphilus
NCBI taxonomy Id: 314271
Other names: M. alkaliphilus, M. alkaliphilus HTCC2654, Maritimibacter, Maritimibacter Lee et al. 2007, Maritimibacter alkaliphilus, Maritimibacter alkaliphilus HTCC2654, Maritimibacter alkaliphilus Lee et al. 2007, Maritimibacter alkaliphilus str. HTCC2654, Maritimibacter alkaliphilus strain HTCC2654, Rhodobacterales bacterium HTCC2654
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