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rnr protein (Maritimibacter alkaliphilus) - STRING interaction network
"rnr" - Ribonuclease R in Maritimibacter alkaliphilus
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
rnrRibonuclease R ; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (751 aa)    
Predicted Functional Partners:
RB2654_13249
Exonuclease, putative (203 aa)
   
  0.963
rph
tRNA nucleotidyltransferase ; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates (250 aa)
   
  0.962
RB2654_10229
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (223 aa)
       
      0.945
rnd
Ribonuclease D ; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides (387 aa)
     
  0.923
smpB
Small protein B ; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to tra [...] (161 aa)
       
  0.896
RB2654_09494
Iron(III) dicitrate ABC transporter (Lipoprotein) (302 aa)
     
      0.834
RB2654_13640
PolyA polymerase family protein (387 aa)
   
 
  0.805
RB2654_16906
Uncharacterized protein (204 aa)
       
      0.772
RB2654_13244
Uncharacterized protein (191 aa)
              0.764
RB2654_12164
Ribosomal RNA small subunit methyltransferase B, putative (420 aa)
 
      0.752
Your Current Organism:
Maritimibacter alkaliphilus
NCBI taxonomy Id: 314271
Other names: M. alkaliphilus, M. alkaliphilus HTCC2654, Maritimibacter, Maritimibacter Lee et al. 2007, Maritimibacter alkaliphilus, Maritimibacter alkaliphilus HTCC2654, Maritimibacter alkaliphilus Lee et al. 2007, Maritimibacter alkaliphilus str. HTCC2654, Maritimibacter alkaliphilus strain HTCC2654, Rhodobacterales bacterium HTCC2654
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