STRINGSTRING
RB2654_13489 protein (Maritimibacter alkaliphilus) - STRING interaction network
"RB2654_13489" - Putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease in Maritimibacter alkaliphilus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2654_13489Putative DNA polymerase III, epsilon subunit and related 3’-5’exonuclease (230 aa)    
Predicted Functional Partners:
RB2654_12884
DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (372 aa)
 
 
  0.994
RB2654_18898
DNA-directed DNA polymerase (1171 aa)
     
  0.966
RB2654_10174
DNA polymerase III subunits gamma and tau (576 aa)
     
  0.963
RB2654_10393
DNA polymerase I (932 aa)
   
  0.937
rnhA
Ribonuclease H ; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (149 aa)
 
 
  0.918
RB2654_13504
Maf-like protein RB2654_13504 (199 aa)
   
 
  0.910
RB2654_13499
Shikimate 5-dehydrogenase (277 aa)
         
  0.907
coaE
Dephosphocoenzyme A kinase ; Catalyzes the phosphorylation of the 3’-hydroxyl group of dephosphocoenzyme A to form coenzyme A (197 aa)
   
        0.883
dnaE2
Error-prone DNA polymerase ; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase (960 aa)
     
  0.877
RB2654_15544
Uncharacterized protein (340 aa)
       
  0.876
Your Current Organism:
Maritimibacter alkaliphilus
NCBI taxonomy Id: 314271
Other names: M. alkaliphilus, M. alkaliphilus HTCC2654, Maritimibacter, Maritimibacter Lee et al. 2007, Maritimibacter alkaliphilus, Maritimibacter alkaliphilus HTCC2654, Maritimibacter alkaliphilus Lee et al. 2007, Maritimibacter alkaliphilus str. HTCC2654, Maritimibacter alkaliphilus strain HTCC2654, Rhodobacterales bacterium HTCC2654
Server load: low (7%) [HD]