STRINGSTRING
RB2654_14440 protein (Maritimibacter alkaliphilus) - STRING interaction network
"RB2654_14440" - Diaminopimelate epimerase in Maritimibacter alkaliphilus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB2654_14440Diaminopimelate epimerase (156 aa)    
Predicted Functional Partners:
lysA
Diaminopimelate decarboxylase ; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (421 aa)
   
 
  0.998
dapE
N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase ; Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls (381 aa)
       
  0.991
RB2654_17861
Probable succinyl-diaminopimelate desuccinylase (426 aa)
       
  0.985
murE
UDP-N-acetylmuramyl-tripeptide synthetase (495 aa)
 
 
  0.923
carB
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) (1089 aa)
 
 
  0.917
RB2654_15621
Putative aspartate aminotransferase (394 aa)
       
  0.802
dapD
Tetrahydrodipicolinate N-succinyltransferase (275 aa)
   
   
  0.788
RB2654_20473
Aspartokinase (411 aa)
 
 
  0.787
dapB
4-hydroxy-tetrahydrodipicolinate reductase ; Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate (269 aa)
 
   
  0.738
RB2654_15991
4-hydroxy-tetrahydrodipicolinate synthase ; Catalyzes the condensation of (S)-aspartate-beta- semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) (290 aa)
 
   
  0.720
Your Current Organism:
Maritimibacter alkaliphilus
NCBI taxonomy Id: 314271
Other names: M. alkaliphilus, M. alkaliphilus HTCC2654, Maritimibacter, Maritimibacter Lee et al. 2007, Maritimibacter alkaliphilus, Maritimibacter alkaliphilus HTCC2654, Maritimibacter alkaliphilus Lee et al. 2007, Maritimibacter alkaliphilus str. HTCC2654, Maritimibacter alkaliphilus strain HTCC2654, Rhodobacterales bacterium HTCC2654
Server load: low (8%) [HD]