STRINGSTRING
lysA protein (Maritimibacter alkaliphilus) - STRING interaction network
"lysA" - Diaminopimelate decarboxylase in Maritimibacter alkaliphilus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysADiaminopimelate decarboxylase ; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (421 aa)    
Predicted Functional Partners:
RB2654_14440
Diaminopimelate epimerase (156 aa)
   
 
  0.998
RB2654_20473
Aspartokinase (411 aa)
  0.958
RB2654_15991
4-hydroxy-tetrahydrodipicolinate synthase ; Catalyzes the condensation of (S)-aspartate-beta- semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) (290 aa)
   
  0.947
dapB
4-hydroxy-tetrahydrodipicolinate reductase ; Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate (269 aa)
 
   
  0.895
asd
Aspartate-beta-semialdehyde dehydrogenase ; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate (340 aa)
 
 
  0.859
murE
UDP-N-acetylmuramyl-tripeptide synthetase (495 aa)
     
 
  0.855
argH
Arginosuccinase (466 aa)
 
 
  0.843
RB2654_16786
Uncharacterized protein (855 aa)
              0.826
RB2654_05977
Aspartate aminotransferase (400 aa)
 
 
  0.813
RB2654_21303
Homoserine dehydrogenase (430 aa)
 
 
  0.792
Your Current Organism:
Maritimibacter alkaliphilus
NCBI taxonomy Id: 314271
Other names: M. alkaliphilus, M. alkaliphilus HTCC2654, Maritimibacter, Maritimibacter Lee et al. 2007, Maritimibacter alkaliphilus, Maritimibacter alkaliphilus HTCC2654, Maritimibacter alkaliphilus Lee et al. 2007, Maritimibacter alkaliphilus str. HTCC2654, Maritimibacter alkaliphilus strain HTCC2654, Rhodobacterales bacterium HTCC2654
Server load: low (10%) [HD]