STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR08628.1Protocatechuate 4,5-dioxygenase beta chain. (282 aa)    
Predicted Functional Partners:
EAR08638.1
Protocatechuate 4,5-dioxygenase, alpha chain.
  
  0.995
EAR08627.1
Possible protocatechuate 4,5-dioxygenase small subunit (AB035121).
  
  0.988
EAR08621.1
2-pyrone-4,6-dicarboxylic acid hydrolase; COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
 0.956
EAR08623.1
COG0673 Predicted dehydrogenases and related proteins.
 
  
 0.953
EAR08639.1
Protocatechuate 4,5-dioxygenase, beta chain.
  
  
 
0.905
EAR08630.1
4-hydroxybenzoate 3-monooxygenase; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
 
  
 0.899
EAR08620.1
FldA protein; COG2828 Uncharacterized protein conserved in bacteria.
 
  
 0.887
EAR08626.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.868
EAR08614.1
4-Oxalomesaconate hydratase; COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
 0.859
EAR08611.1
4-hydroxybenzoate 3-monooxygenase; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
 
  
 0.856
Your Current Organism:
Reinekea blandensis
NCBI taxonomy Id: 314283
Other names: R. blandensis MED297, Reinekea blandensis MED297, Reinekea blandensis str. MED297, Reinekea blandensis strain MED297, Reinekea sp. MED297
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