STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR08656.1Sigma-54 dependent transcriptional regulator; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (317 aa)    
Predicted Functional Partners:
EAR10144.1
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.934
EAR08839.1
Hypothetical 1041 kDa protein in hypE 3'region; COG2199 FOG: GGDEF domain.
  
 
 0.924
EAR10613.1
PAS; COG0642 Signal transduction histidine kinase.
    
 0.921
EAR11317.1
Probable sensor/response regulator hybrid; COG0642 Signal transduction histidine kinase.
    
 0.919
EAR09148.1
Hypothetical tryptophan-rich sensor protein; COG0642 Signal transduction histidine kinase.
    
 0.912
EAR10909.1
Putative Sensory box histidine kinase/response regulator; COG0591 Na+/proline symporter.
    
 0.896
EAR07984.1
COG0591 Na+/proline symporter.
    
 0.896
EAR08975.1
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
    
 0.893
EAR10337.1
Sensor/response regulator hybrid; COG0642 Signal transduction histidine kinase.
    
 0.877
EAR10029.1
COG0642 Signal transduction histidine kinase.
   
 0.877
Your Current Organism:
Reinekea blandensis
NCBI taxonomy Id: 314283
Other names: R. blandensis MED297, Reinekea blandensis MED297, Reinekea blandensis str. MED297, Reinekea blandensis strain MED297, Reinekea sp. MED297
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.