STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aguAPutative peptidylarginine deiminase (Amidinotransferase). (375 aa)    
Predicted Functional Partners:
aguA-2
Putative peptidylarginine deiminase (Amidinotransferase).
 
  
 
0.962
ptcA
Putative ornithine carbamoyltransferase (OTCase); Catalyzes the phosphorolysis of N-carbamoylputrescine to form carbamoyl phosphate and putrescine. Is involved in the degradation pathway of the polyamine agmatine.
 
   
 0.917
LCA_0068
Putative amino acid/polyamine antiporter (N-terminal fragment), authentic frameshift.
   
 0.905
LCA_0071
Putative carbamate kinase; Belongs to the carbamate kinase family.
  
  
 0.904
LCA_0069
Putative amino acid/polyamine antiporter (C-terminal fragment), authentic frameshift.
 
   
 0.860
arcA
Arginine deiminase (Arginine dihydrolase).
      
 0.669
LCA_0073
Putative transcriptional regulator, RpiR family.
 
     0.623
tyrS
Tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
      
 0.485
arcC
Carbamate kinase; Belongs to the carbamate kinase family.
  
  
 0.459
srtA1
Putative surface protein transpeptidase 1 precursor (Sortase 1).
       0.442
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.