STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_0227Putative drug:H(+) antiporter. (447 aa)    
Predicted Functional Partners:
LCA_0230
Putative transcriptional regulator, MerR family (C-terminal fragment), authentic frameshift.
 
    0.892
LCA_0228
5 Proteins of unknown function that are similar to other proteins.
 
    0.834
LCA_0419
Putative drug:H(+) antiporter (C-terminal fragment), authentic frameshift.
 
  
 0.741
LCA_0229
Putative transcriptional regulator, MerR family (N-terminal fragment), authentic frameshift.
       0.737
pepN
Aminopeptidase N (Lysyl-aminopeptidase-Alanyl aminopeptidase).
       0.539
LCA_0231
Putative transcriptional regulator, MarR family.
       0.505
lmrA
Multidrug ABC exporter, ATP-binding and membrane-spanning/permease subunits.
       0.488
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.