STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_0234Putative Na(+):H(+) antiporter (C-terminal fragment), authentic frameshift. (557 aa)    
Predicted Functional Partners:
LCA_0233
Putative NA(+):H(+) antiporter (N-terminal fragment), authentic frameshift.
     0.994
LCA_1728
Hypothetical cell surface protein precursor.
 
     0.649
LCA_0209
Hypothetical integral membrane protein.
  
     0.647
lmrA
Multidrug ABC exporter, ATP-binding and membrane-spanning/permease subunits.
  
   0.573
LCA_0231
Putative transcriptional regulator, MarR family.
       0.552
LCA_0534
Hypothetical cell surface protein precursor (with LPQTG sorting signal).
  
     0.523
LCA_1729
Hypothetical cell surface protein precursor.
 
     0.445
LCA_0113
6 Protein of unknown function, without similarity to other proteins.
 
     0.427
LCA_0118
6 Protein of unknown function, without similarity to other proteins.
  
     0.407
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.