STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_0258Putative iron-containing alcohol dehydrogenase (oxidoreductase). (383 aa)    
Predicted Functional Partners:
LCA_1702
Putative zinc-containing alcohol dehydrogenase (oxidoreductase).
  
 0.954
adhE
Bifunctional enzyme: alcohol dehydrogenase, acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
 
0.949
LCA_0259
Pyrimidine-specific nucleoside symporter.
       0.774
LCA_0257
6 Protein of unknown function, without similarity to other proteins.
       0.762
LCA_0260
Putative aldo/keto reductase (oxidoreductase).
     
 0.616
LCA_0542
Aryl-alcohol dehydrogenase.
  
 
 0.582
trpF
Putative phosphoribosyl isomerase; Belongs to the TrpF family.
 
    0.491
tnpB3-IS1520
Transposase (orfB) of IS1520 (IS3 family).
       0.476
tnpA3-IS1520
Transposase (orfA) of IS1520 (IS3 family).
       0.476
fruA
Fructose-specific phosphotransferase system, enzyme IIABC.
  
  
 0.458
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.