STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gntRGluconate operon transcriptional regulator, RpiR family. (280 aa)    
Predicted Functional Partners:
LCA_1198
Putative trehalose and glucose-specific phosphotransferase system, enzyme EIIA.
 
  
 0.681
gntZ
6-phosphogluconate dehydrogenase.
 
   
 0.637
nagE
N-acetylglucosamine and glucose-specific phosphotransferase system, enzyme IIABC.
  
  
 0.630
LCA_1200
Putative trehalose and glucose-specific phosphotransferase system, enzyme IIBC.
  
  
 0.630
scrA
Sucrose-specific phosphotransferase system, enzyme IIBCA.
  
  
 0.630
gntK
Gluconokinase; Belongs to the FGGY kinase family.
 
     0.617
fruA
Fructose-specific phosphotransferase system, enzyme IIABC.
     
 0.588
gntP
Gluconate:H(+) symporter.
 
     0.484
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.