STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtI[Q] COG1233 Phytoene dehydrogenase and related proteins. (488 aa)    
Predicted Functional Partners:
KB13_1120
Phytoene synthase, putative; [I] COG1562 Phytoene/squalene synthetase.
 
 0.995
KB13_384
Lycopene cyclase, putative.
 
 
 0.976
KB13_90
[I] COG1562 Phytoene/squalene synthetase.
 
 
 0.958
KB13_1257
Squalene/phytoene synthase, putative; [I] COG1562 Phytoene/squalene synthetase.
 
 
 0.921
KB13_632
Xanthorhodopsin; [R] COG5524 Bacteriorhodopsin.
 
   
 0.846
KB13_2
Polyprenyl synthetase superfamily protein; [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.842
KB13_1022
Putative transmembrane protein.
       0.667
dhaL
[C] COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
  
 
 0.637
KB13_137
4-hydroxybenzoate octaprenyltransferase; [O] COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor).
  
 
 0.583
ttk
Putative transcriptional regulator of dUTPase (TetR/AcrR family); [K] COG1309 Transcriptional regulator.
     
 0.574
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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