STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_19Glycosyl transferase, family 39, putative; [M] COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family. (540 aa)    
Predicted Functional Partners:
KB13_950
[S] COG4390 Uncharacterized protein conserved in bacteria.
  
     0.757
KB13_987
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.755
KB13_392
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.746
KB13_184
[M] COG1560 Lauroyl/myristoyl acyltransferase.
  
  
 0.711
KB13_931
Hypothetical protein; [G] COG2956 Predicted N-acetylglucosaminyl transferase; tetratricopeptide region.
  
     0.649
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
       0.633
KB13_1140
Sulfatase; [M] COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily.
   
 
 0.628
KB13_264
[M] COG3317 Uncharacterized lipoprotein.
  
     0.616
KB13_360
[R] COG0795 Predicted permeases; overlaps another CDS with the same product name.
 
     0.605
KB13_997
Hypothetical cytosolic protein; [S] COG4394 Uncharacterized protein conserved in bacteria.
  
     0.602
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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