STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_966[M] COG0463 Glycosyltransferases involved in cell wall biogenesis. (407 aa)    
Predicted Functional Partners:
KB13_1221
Sucrose phosphorylase; [G] COG0366 Glycosidases.
   
 0.993
mpgSP
Mannosyl-3-phosphoglycerate synthase/mannosyl-3-phosphoglycerate phosphatase; [R] COG0561 Predicted hydrolases of the HAD superfamily.
 
     0.951
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
  
 
 0.867
KB13_842
[C] COG3038 Cytochrome B561.
       0.661
KB13_604
Radical SAM domain protein; [C] COG0731 Fe-S oxidoreductases.
       0.631
KB13_389
Acetate permease; [ER] COG0591 Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.551
KB13_65
Conserved hypothetical protein; [S] COG3162 Predicted membrane protein.
       0.551
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
   
 
 0.532
KB13_324
Metallo-beta-lactamase family protein; [R] COG0491 Zn-dependent hydrolases, including glyoxylases.
       0.455
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
  
   0.450
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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