STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TrkHPotassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. (474 aa)    
Predicted Functional Partners:
TrkA
Potassium uptake protein TrkA; COG0569 K+ transport systems, NAD-binding component.
 
 
 0.951
EDP99032.1
Glutathione-regulated potassium-efflux system protein KefC, putative; COG4651 Kef-type K+ transport system, predicted NAD-binding component; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
 
 0.845
EDQ00333.1
Ion transporter; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.
  
 
 0.783
HemG
COG4635 Flavodoxin.
       0.520
EDQ00848.1
Glutathione-regulated potassium-efflux system protein KefB, putative; COG0475 Kef-type K+ transport systems, membrane components; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
 
 0.483
pepQ
Prolidase; Splits dipeptides with a prolyl residue in the C-terminal position.
     
 0.476
YigZ
Hypothetical protein.
       0.474
EDQ01529.1
Two-component hybrid sensor and regulator; COG0642 Signal transduction histidine kinase.
     
 0.460
NifJ
COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
   
 
 0.424
Your Current Organism:
Shewanella benthica
NCBI taxonomy Id: 314608
Other names: S. benthica KT99, Shewanella benthica KT99, Shewanella benthica str. KT99, Shewanella benthica strain KT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.