STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH44562.1Hypothetical protein. (323 aa)    
Predicted Functional Partners:
kpsU
3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase).
       0.587
kdsD
Arabinose-5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily.
       0.587
algA
Mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.575
SFH44585.1
ABC transporter.
       0.559
SFG40669.1
Hypothetical protein.
  
 
 0.556
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase); Belongs to the KdsA family.
       0.552
pglF_1
O-antigen biosynthesis protein WbqV.
  
 
 0.446
SFH07561.1
ABC-type polysaccharide/polyol phosphate export permease.
  
  
 0.446
pglF_2
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase; NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
 
 0.446
capD
UDP-glucose 4-epimerase.
  
 
 0.446
Your Current Organism:
Palleronia marisminoris
NCBI taxonomy Id: 315423
Other names: CECT 7066, LMG 22959, LMG:22959, P. marisminoris, Palleronia marisminoris Martinez-Checa et al. 2005 emend. Albuquerque et al. 2015, strain B33
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.