STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynBXylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (545 aa)    
Predicted Functional Partners:
afr_3
Predicted dehydrogenase.
 
  
  0.834
SFH47356.1
Hypothetical protein.
 
     0.811
araQ_7
Raffinose/stachyose/melibiose transport system permease protein.
       0.786
lacF_8
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-).
       0.773
ugpC_6
Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.773
araN
Raffinose/stachyose/melibiose transport system substrate-binding protein.
 
     0.759
abfA_2
alpha-N-arabinofuranosidase.
 
  
 0.742
abfA_1
alpha-N-arabinofuranosidase.
 
  
 0.740
chbP
Cellobionic acid phosphorylase.
  
  
 0.639
xylA
D-xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.627
Your Current Organism:
Palleronia marisminoris
NCBI taxonomy Id: 315423
Other names: CECT 7066, LMG 22959, LMG:22959, P. marisminoris, Palleronia marisminoris Martinez-Checa et al. 2005 emend. Albuquerque et al. 2015, strain B33
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.