STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABS20562.1PFAM: ABC-2 type transporter; KEGG: bca:BCE_0213 hypothetical protein. (392 aa)    
Predicted Functional Partners:
ABS20561.1
PFAM: regulatory protein TetR; KEGG: btl:BALH_0191 transcription regulator, TetR/AcrR family.
 
    0.802
ABS21726.1
PFAM: regulatory protein MarR; KEGG: btl:BALH_1537 transcriptional regulator, MarR family.
 
     0.568
ABS21607.1
KEGG: swo:Swol_1314 hypothetical protein.
  
     0.543
ABS21822.1
PFAM: transglutaminase domain protein; KEGG: bce:BC1991 putative murein endopeptidase.
  
     0.516
ABS21613.1
KEGG: swo:Swol_1310 hypothetical protein.
  
     0.474
ABS21725.1
KEGG: bca:BCE_1825 hypothetical protein.
  
     0.459
ABS21615.1
PFAM: phage portal protein SPP1; KEGG: swo:Swol_1309 hypothetical protein.
  
     0.453
ABS21769.1
KEGG: sha:SH0335 hypothetical protein.
  
 
   0.429
ABS20560.1
Hypothetical protein.
       0.427
ABS21776.1
KEGG: bca:BCE_1950 hypothetical protein.
  
     0.423
Your Current Organism:
Bacillus cytotoxicus
NCBI taxonomy Id: 315749
Other names: B. cytotoxicus NVH 391-98, Bacillus cereus NVH 391-98, Bacillus cereus subsp. cytotoxicus NVH 391-98, Bacillus cereus subsp. cytotoxis NVH 391-98, Bacillus cytotoxicus NVH 391-98, Bacillus cytotoxicus str. NVH 391-98, Bacillus cytotoxicus strain NVH 391-98, Bacillus cytotoxis NVH 391-98
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.