Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BPUM_0320 | BPUM_0323 | BPUM_0320 | BPUM_0323 | Non-ribosomal peptide synthetase. | Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.999 |
BPUM_0320 | BPUM_1814 | BPUM_0320 | BPUM_1814 | Non-ribosomal peptide synthetase. | Glutamate synthase. | 0.777 |
BPUM_0320 | ddl | BPUM_0320 | BPUM_0427 | Non-ribosomal peptide synthetase. | D-alanine--D-alanine ligase; Cell wall formation. | 0.924 |
BPUM_0320 | murF | BPUM_0320 | BPUM_0428 | Non-ribosomal peptide synthetase. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.685 |
BPUM_0323 | BPUM_0320 | BPUM_0323 | BPUM_0320 | Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family. | Non-ribosomal peptide synthetase. | 0.999 |
BPUM_0323 | BPUM_1814 | BPUM_0323 | BPUM_1814 | Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family. | Glutamate synthase. | 0.781 |
BPUM_0323 | ddl | BPUM_0323 | BPUM_0427 | Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family. | D-alanine--D-alanine ligase; Cell wall formation. | 0.948 |
BPUM_0323 | murF | BPUM_0323 | BPUM_0428 | Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.685 |
BPUM_1814 | BPUM_0320 | BPUM_1814 | BPUM_0320 | Glutamate synthase. | Non-ribosomal peptide synthetase. | 0.777 |
BPUM_1814 | BPUM_0323 | BPUM_1814 | BPUM_0323 | Glutamate synthase. | Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.781 |
BPUM_1814 | ddl | BPUM_1814 | BPUM_0427 | Glutamate synthase. | D-alanine--D-alanine ligase; Cell wall formation. | 0.916 |
BPUM_1814 | murE | BPUM_1814 | BPUM_1411 | Glutamate synthase. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.475 |
ddl | BPUM_0320 | BPUM_0427 | BPUM_0320 | D-alanine--D-alanine ligase; Cell wall formation. | Non-ribosomal peptide synthetase. | 0.924 |
ddl | BPUM_0323 | BPUM_0427 | BPUM_0323 | D-alanine--D-alanine ligase; Cell wall formation. | Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.948 |
ddl | BPUM_1814 | BPUM_0427 | BPUM_1814 | D-alanine--D-alanine ligase; Cell wall formation. | Glutamate synthase. | 0.916 |
ddl | divIB | BPUM_0427 | BPUM_1417 | D-alanine--D-alanine ligase; Cell wall formation. | Dihydropteridine reductase; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily. | 0.833 |
ddl | murB | BPUM_0427 | BPUM_1416 | D-alanine--D-alanine ligase; Cell wall formation. | UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. | 0.989 |
ddl | murC | BPUM_0427 | BPUM_2626 | D-alanine--D-alanine ligase; Cell wall formation. | UDP-N-acetylmuramate--alanine ligase MurC; Cell wall formation; Belongs to the MurCDEF family. | 0.993 |
ddl | murD | BPUM_0427 | BPUM_1413 | D-alanine--D-alanine ligase; Cell wall formation. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.902 |
ddl | murE | BPUM_0427 | BPUM_1411 | D-alanine--D-alanine ligase; Cell wall formation. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.852 |
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