Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BPUM_0204 | BPUM_0650 | BPUM_0204 | BPUM_0650 | Alcohol dehydrogenase. | Lipid kinase; Similar to YegS from E. coli. | 0.469 |
BPUM_0204 | mgsA | BPUM_0204 | BPUM_1979 | Alcohol dehydrogenase. | Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate. | 0.766 |
BPUM_0650 | BPUM_0204 | BPUM_0650 | BPUM_0204 | Lipid kinase; Similar to YegS from E. coli. | Alcohol dehydrogenase. | 0.469 |
BPUM_0650 | mgsA | BPUM_0650 | BPUM_1979 | Lipid kinase; Similar to YegS from E. coli. | Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate. | 0.788 |
BPUM_1814 | cca | BPUM_1814 | BPUM_1976 | Glutamate synthase. | tRNA CCA-pyrophosphorylase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. | 0.463 |
BPUM_1814 | mgsA | BPUM_1814 | BPUM_1979 | Glutamate synthase. | Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate. | 0.910 |
BPUM_1977 | BPUM_1978 | BPUM_1977 | BPUM_1978 | N-acetyl-alpha-D-glucosaminyl L-malate synthase. | Bacillithiol biosynthesis deacetylase BshB1. | 0.984 |
BPUM_1977 | BPUM_1981 | BPUM_1977 | BPUM_1981 | N-acetyl-alpha-D-glucosaminyl L-malate synthase. | Nucleotide pyrophosphohydrolase. | 0.825 |
BPUM_1977 | birA | BPUM_1977 | BPUM_1975 | N-acetyl-alpha-D-glucosaminyl L-malate synthase. | biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.873 |
BPUM_1977 | cca | BPUM_1977 | BPUM_1976 | N-acetyl-alpha-D-glucosaminyl L-malate synthase. | tRNA CCA-pyrophosphorylase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. | 0.951 |
BPUM_1977 | dapB | BPUM_1977 | BPUM_1980 | N-acetyl-alpha-D-glucosaminyl L-malate synthase. | 4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. | 0.850 |
BPUM_1977 | mgsA | BPUM_1977 | BPUM_1979 | N-acetyl-alpha-D-glucosaminyl L-malate synthase. | Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate. | 0.938 |
BPUM_1978 | BPUM_1977 | BPUM_1978 | BPUM_1977 | Bacillithiol biosynthesis deacetylase BshB1. | N-acetyl-alpha-D-glucosaminyl L-malate synthase. | 0.984 |
BPUM_1978 | BPUM_1981 | BPUM_1978 | BPUM_1981 | Bacillithiol biosynthesis deacetylase BshB1. | Nucleotide pyrophosphohydrolase. | 0.799 |
BPUM_1978 | birA | BPUM_1978 | BPUM_1975 | Bacillithiol biosynthesis deacetylase BshB1. | biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.829 |
BPUM_1978 | cca | BPUM_1978 | BPUM_1976 | Bacillithiol biosynthesis deacetylase BshB1. | tRNA CCA-pyrophosphorylase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. | 0.947 |
BPUM_1978 | dapB | BPUM_1978 | BPUM_1980 | Bacillithiol biosynthesis deacetylase BshB1. | 4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. | 0.910 |
BPUM_1978 | mgsA | BPUM_1978 | BPUM_1979 | Bacillithiol biosynthesis deacetylase BshB1. | Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate. | 0.947 |
BPUM_1981 | BPUM_1977 | BPUM_1981 | BPUM_1977 | Nucleotide pyrophosphohydrolase. | N-acetyl-alpha-D-glucosaminyl L-malate synthase. | 0.825 |
BPUM_1981 | BPUM_1978 | BPUM_1981 | BPUM_1978 | Nucleotide pyrophosphohydrolase. | Bacillithiol biosynthesis deacetylase BshB1. | 0.799 |
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