Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BPUM_0869 | BPUM_2952 | BPUM_0869 | BPUM_2952 | Histidine kinase. | Serine protease. | 0.498 |
BPUM_0869 | BPUM_2953 | BPUM_0869 | BPUM_2953 | Histidine kinase. | Transcriptional regulator. | 0.989 |
BPUM_0869 | BPUM_2954 | BPUM_0869 | BPUM_2954 | Histidine kinase. | Histidine kinase. | 0.989 |
BPUM_0869 | BPUM_3684 | BPUM_0869 | BPUM_3684 | Histidine kinase. | Serine protease. | 0.498 |
BPUM_0869 | glpK | BPUM_0869 | BPUM_0883 | Histidine kinase. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.464 |
BPUM_0869 | rplY | BPUM_0869 | BPUM_0036 | Histidine kinase. | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.562 |
BPUM_0869 | secA | BPUM_0869 | BPUM_3178 | Histidine kinase. | Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.413 |
BPUM_0869 | secD | BPUM_0869 | BPUM_2406 | Histidine kinase. | Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.427 |
BPUM_2952 | BPUM_0869 | BPUM_2952 | BPUM_0869 | Serine protease. | Histidine kinase. | 0.498 |
BPUM_2952 | BPUM_2953 | BPUM_2952 | BPUM_2953 | Serine protease. | Transcriptional regulator. | 0.528 |
BPUM_2952 | BPUM_2954 | BPUM_2952 | BPUM_2954 | Serine protease. | Histidine kinase. | 0.553 |
BPUM_2952 | BPUM_3684 | BPUM_2952 | BPUM_3684 | Serine protease. | Serine protease. | 0.547 |
BPUM_2952 | atpD | BPUM_2952 | BPUM_3326 | Serine protease. | ATP F0F1 synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 0.464 |
BPUM_2952 | glpK | BPUM_2952 | BPUM_0883 | Serine protease. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.641 |
BPUM_2952 | rplK | BPUM_2952 | BPUM_0087 | Serine protease. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.446 |
BPUM_2952 | rplY | BPUM_2952 | BPUM_0036 | Serine protease. | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.440 |
BPUM_2952 | secA | BPUM_2952 | BPUM_3178 | Serine protease. | Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.454 |
BPUM_2952 | secD | BPUM_2952 | BPUM_2406 | Serine protease. | Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.810 |
BPUM_2953 | BPUM_0869 | BPUM_2953 | BPUM_0869 | Transcriptional regulator. | Histidine kinase. | 0.989 |
BPUM_2953 | BPUM_2952 | BPUM_2953 | BPUM_2952 | Transcriptional regulator. | Serine protease. | 0.528 |
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