STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_3394O-methyltransferase, family 3. (221 aa)    
Predicted Functional Partners:
RPC_3393
Transcriptional regulator, TetR family.
 
     0.883
RPC_3369
Amino acid adenylation.
  
 
 0.729
RPC_2783
ETC complex I subunit conserved region.
  
  
 0.608
RPC_4778
Peptidase U32.
  
  
 0.608
RPC_4779
Peptidase U32.
  
  
 0.608
RPC_3036
Amino acid adenylation.
 
 
 
 0.551
RPC_3363
AMP-dependent synthetase and ligase.
  
 
 0.501
RPC_3362
Amino acid adenylation.
  
  
 0.490
RPC_1528
Glutathione S-transferase-like.
 
   0.441
RPC_3035
Beta-ketoacyl synthase.
  
 
 0.400
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.