STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_34944-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (424 aa)    
Predicted Functional Partners:
RPC_3493
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.974
RPC_3095
Methylmalonate-semialdehyde dehydrogenase (acylating).
 0.950
RPC_0104
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.942
RPC_0454
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.942
RPC_3193
Aldehyde dehydrogenase.
 
 0.942
RPC_0894
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
0.930
RPC_0735
3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
   
 0.925
panC
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
     
 0.910
RPC_1046
6-phosphogluconate dehydrogenase, NAD-binding.
     
  0.900
RPC_2065
3-hydroxyisobutyrate dehydrogenase.
     
  0.900
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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