STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPC_3898ATPase. (813 aa)    
Predicted Functional Partners:
RPC_3892
Conjugation TrbI-like protein.
  
 0.991
RPC_3893
Conjugal transfer protein TrbG/VirB9/CagX.
 
  
 0.991
RPC_3532
Conjugation TrbI-like protein.
  
 0.963
RPC_3533
Conjugal transfer protein TrbG/VirB9/CagX.
 
  
 0.962
RPC_3894
Conjugal transfer protein.
 
  
 0.959
RPC_3897
Putative conjugal transfer protein TrbJ.
 
   
 0.958
RPC_3895
TrbL/VirB6 plasmid conjugal transfer protein.
 
   
 0.956
RPC_3900
Conjugal transfer protein TrbC.
 
 
 
 0.953
RPC_3899
Type IV secretory pathway, VirB3-like.
 
   
 0.944
RPC_3901
Type II secretion system protein E.
 
   
 0.932
Your Current Organism:
Rhodopseudomonas palustris BisB18
NCBI taxonomy Id: 316056
Other names: R. palustris BisB18, Rhodopseudomonas palustris str. BisB18, Rhodopseudomonas palustris strain BisB18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.