Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RPC_4707 | RPC_4776 | RPC_4707 | RPC_4776 | Inositol monophosphatase. | Inositol-1(or 4)-monophosphatase. | 0.927 |
RPC_4707 | nusA | RPC_4707 | RPC_0478 | Inositol monophosphatase. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.740 |
RPC_4707 | nusB | RPC_4707 | RPC_2664 | Inositol monophosphatase. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.687 |
RPC_4707 | nusG | RPC_4707 | RPC_3473 | Inositol monophosphatase. | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | 0.757 |
RPC_4707 | rpoB | RPC_4707 | RPC_3458 | Inositol monophosphatase. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.693 |
RPC_4707 | rpoC | RPC_4707 | RPC_3457 | Inositol monophosphatase. | DNA-directed RNA polymerase, subunit beta-prime; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.693 |
RPC_4707 | rpoZ | RPC_4707 | RPC_2634 | Inositol monophosphatase. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.747 |
RPC_4707 | rpsJ | RPC_4707 | RPC_3449 | Inositol monophosphatase. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.554 |
RPC_4773 | RPC_4775 | RPC_4773 | RPC_4775 | Fructose-bisphosphate aldolase. | Sel1-like. | 0.870 |
RPC_4773 | RPC_4776 | RPC_4773 | RPC_4776 | Fructose-bisphosphate aldolase. | Inositol-1(or 4)-monophosphatase. | 0.550 |
RPC_4775 | RPC_4773 | RPC_4775 | RPC_4773 | Sel1-like. | Fructose-bisphosphate aldolase. | 0.870 |
RPC_4775 | RPC_4776 | RPC_4775 | RPC_4776 | Sel1-like. | Inositol-1(or 4)-monophosphatase. | 0.583 |
RPC_4776 | RPC_4707 | RPC_4776 | RPC_4707 | Inositol-1(or 4)-monophosphatase. | Inositol monophosphatase. | 0.927 |
RPC_4776 | RPC_4773 | RPC_4776 | RPC_4773 | Inositol-1(or 4)-monophosphatase. | Fructose-bisphosphate aldolase. | 0.550 |
RPC_4776 | RPC_4775 | RPC_4776 | RPC_4775 | Inositol-1(or 4)-monophosphatase. | Sel1-like. | 0.583 |
RPC_4776 | nusA | RPC_4776 | RPC_0478 | Inositol-1(or 4)-monophosphatase. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.740 |
RPC_4776 | nusB | RPC_4776 | RPC_2664 | Inositol-1(or 4)-monophosphatase. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.709 |
RPC_4776 | nusG | RPC_4776 | RPC_3473 | Inositol-1(or 4)-monophosphatase. | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | 0.757 |
RPC_4776 | rpoB | RPC_4776 | RPC_3458 | Inositol-1(or 4)-monophosphatase. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.693 |
RPC_4776 | rpoC | RPC_4776 | RPC_3457 | Inositol-1(or 4)-monophosphatase. | DNA-directed RNA polymerase, subunit beta-prime; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.693 |
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