Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RPD_0224 | katG | RPD_0224 | RPD_0223 | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. | 0.625 |
RPD_0488 | RPD_0617 | RPD_0488 | RPD_0617 | Superoxide dismutase, copper/zinc binding; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | 0.626 |
RPD_0488 | RPD_3621 | RPD_0488 | RPD_3621 | Superoxide dismutase, copper/zinc binding; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.885 |
RPD_0488 | katG | RPD_0488 | RPD_0223 | Superoxide dismutase, copper/zinc binding; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. | 0.630 |
RPD_0617 | RPD_0488 | RPD_0617 | RPD_0488 | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | Superoxide dismutase, copper/zinc binding; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | 0.626 |
RPD_0617 | RPD_3621 | RPD_0617 | RPD_3621 | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.423 |
RPD_0617 | katG | RPD_0617 | RPD_0223 | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. | 0.937 |
RPD_3538 | RPD_3925 | RPD_3538 | RPD_3925 | Prephenate dehydratase. | Aminotransferase. | 0.989 |
RPD_3538 | RPD_4177 | RPD_3538 | RPD_4177 | Prephenate dehydratase. | Pyridoxal-dependent decarboxylase. | 0.814 |
RPD_3538 | hisC | RPD_3538 | RPD_4101 | Prephenate dehydratase. | Histidinol phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.929 |
RPD_3538 | katG | RPD_3538 | RPD_0223 | Prephenate dehydratase. | Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. | 0.800 |
RPD_3621 | RPD_0488 | RPD_3621 | RPD_0488 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Superoxide dismutase, copper/zinc binding; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | 0.885 |
RPD_3621 | RPD_0617 | RPD_3621 | RPD_0617 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | 0.423 |
RPD_3621 | katG | RPD_3621 | RPD_0223 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. | 0.638 |
RPD_3925 | RPD_3538 | RPD_3925 | RPD_3538 | Aminotransferase. | Prephenate dehydratase. | 0.989 |
RPD_3925 | RPD_4177 | RPD_3925 | RPD_4177 | Aminotransferase. | Pyridoxal-dependent decarboxylase. | 0.912 |
RPD_3925 | hisC | RPD_3925 | RPD_4101 | Aminotransferase. | Histidinol phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.921 |
RPD_3925 | katG | RPD_3925 | RPD_0223 | Aminotransferase. | Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. | 0.901 |
RPD_4177 | RPD_3538 | RPD_4177 | RPD_3538 | Pyridoxal-dependent decarboxylase. | Prephenate dehydratase. | 0.814 |
RPD_4177 | RPD_3925 | RPD_4177 | RPD_3925 | Pyridoxal-dependent decarboxylase. | Aminotransferase. | 0.912 |
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