STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1007Secretion protein HlyD. (317 aa)    
Predicted Functional Partners:
RPD_1006
Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.974
RPD_1009
Peptidase C14, caspase catalytic subunit p20.
 
 
 
 0.639
RPD_3061
Conserved hypothetical protein.
  
     0.625
RPD_3795
Conserved hypothetical protein.
 
     0.608
RPD_3193
Methyltransferase type 11.
  
     0.552
RPD_1008
OmpA/MotB.
   
 
 0.491
RPD_4374
ATP-binding region, ATPase-like.
  
     0.460
RPD_2466
Peptidase C14, caspase catalytic subunit p20.
  
     0.458
RPD_2883
Methyltransferase FkbM.
  
     0.438
RPD_4188
Heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.438
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.