Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RPD_0875 | RPD_0876 | RPD_0875 | RPD_0876 | Glutamate synthase (NADH) large subunit. | Glutamate synthase (NADH) small subunit. | 0.999 |
RPD_0875 | RPD_0958 | RPD_0875 | RPD_0958 | Glutamate synthase (NADH) large subunit. | Glutamate synthase (NADPH) small chain; Sulfide dehydrogenase (flavoprotein) subunit SudA / sulfide dehydrogenase (flavoprotein) subunit SudB. | 0.999 |
RPD_0875 | RPD_1385 | RPD_0875 | RPD_1385 | Glutamate synthase (NADH) large subunit. | L-glutamine synthetase. | 0.989 |
RPD_0875 | RPD_2901 | RPD_0875 | RPD_2901 | Glutamate synthase (NADH) large subunit. | L-glutamine synthetase. | 0.989 |
RPD_0875 | RPD_3707 | RPD_0875 | RPD_3707 | Glutamate synthase (NADH) large subunit. | L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.939 |
RPD_0875 | glmS | RPD_0875 | RPD_2618 | Glutamate synthase (NADH) large subunit. | Glutamine--fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | 0.973 |
RPD_0875 | glsA | RPD_0875 | RPD_1383 | Glutamate synthase (NADH) large subunit. | L-glutaminase; Belongs to the glutaminase family. | 0.947 |
RPD_0875 | murD | RPD_0875 | RPD_3396 | Glutamate synthase (NADH) large subunit. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.553 |
RPD_0875 | murI | RPD_0875 | RPD_1768 | Glutamate synthase (NADH) large subunit. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.584 |
RPD_0875 | purF | RPD_0875 | RPD_2997 | Glutamate synthase (NADH) large subunit. | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family. | 0.967 |
RPD_0876 | RPD_0875 | RPD_0876 | RPD_0875 | Glutamate synthase (NADH) small subunit. | Glutamate synthase (NADH) large subunit. | 0.999 |
RPD_0876 | RPD_0958 | RPD_0876 | RPD_0958 | Glutamate synthase (NADH) small subunit. | Glutamate synthase (NADPH) small chain; Sulfide dehydrogenase (flavoprotein) subunit SudA / sulfide dehydrogenase (flavoprotein) subunit SudB. | 0.989 |
RPD_0876 | RPD_1385 | RPD_0876 | RPD_1385 | Glutamate synthase (NADH) small subunit. | L-glutamine synthetase. | 0.932 |
RPD_0876 | RPD_2901 | RPD_0876 | RPD_2901 | Glutamate synthase (NADH) small subunit. | L-glutamine synthetase. | 0.932 |
RPD_0876 | RPD_3707 | RPD_0876 | RPD_3707 | Glutamate synthase (NADH) small subunit. | L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.930 |
RPD_0876 | glmS | RPD_0876 | RPD_2618 | Glutamate synthase (NADH) small subunit. | Glutamine--fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | 0.922 |
RPD_0876 | glsA | RPD_0876 | RPD_1383 | Glutamate synthase (NADH) small subunit. | L-glutaminase; Belongs to the glutaminase family. | 0.906 |
RPD_0876 | purF | RPD_0876 | RPD_2997 | Glutamate synthase (NADH) small subunit. | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family. | 0.915 |
RPD_0958 | RPD_0875 | RPD_0958 | RPD_0875 | Glutamate synthase (NADPH) small chain; Sulfide dehydrogenase (flavoprotein) subunit SudA / sulfide dehydrogenase (flavoprotein) subunit SudB. | Glutamate synthase (NADH) large subunit. | 0.999 |
RPD_0958 | RPD_0876 | RPD_0958 | RPD_0876 | Glutamate synthase (NADPH) small chain; Sulfide dehydrogenase (flavoprotein) subunit SudA / sulfide dehydrogenase (flavoprotein) subunit SudB. | Glutamate synthase (NADH) small subunit. | 0.989 |
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