Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RPD_2380 | RPD_4247 | RPD_2380 | RPD_4247 | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | Twin-arginine translocation pathway signal. | 0.924 |
RPD_2380 | RPD_4248 | RPD_2380 | RPD_4248 | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | Sulfide dehydrogenase (flavoprotein). | 0.925 |
RPD_2380 | tam | RPD_2380 | RPD_3451 | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate. | 0.597 |
RPD_3449 | RPD_3450 | RPD_3449 | RPD_3450 | Lytic murein transglycosylase. | Uncharacterized protein UPF0114. | 0.873 |
RPD_3449 | tam | RPD_3449 | RPD_3451 | Lytic murein transglycosylase. | Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate. | 0.558 |
RPD_3450 | RPD_3449 | RPD_3450 | RPD_3449 | Uncharacterized protein UPF0114. | Lytic murein transglycosylase. | 0.873 |
RPD_3450 | RPD_3452 | RPD_3450 | RPD_3452 | Uncharacterized protein UPF0114. | ABC transporter related. | 0.415 |
RPD_3450 | tam | RPD_3450 | RPD_3451 | Uncharacterized protein UPF0114. | Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate. | 0.597 |
RPD_3452 | RPD_3450 | RPD_3452 | RPD_3450 | ABC transporter related. | Uncharacterized protein UPF0114. | 0.415 |
RPD_3452 | tam | RPD_3452 | RPD_3451 | ABC transporter related. | Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate. | 0.493 |
RPD_4247 | RPD_2380 | RPD_4247 | RPD_2380 | Twin-arginine translocation pathway signal. | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | 0.924 |
RPD_4247 | RPD_4248 | RPD_4247 | RPD_4248 | Twin-arginine translocation pathway signal. | Sulfide dehydrogenase (flavoprotein). | 0.977 |
RPD_4247 | tam | RPD_4247 | RPD_3451 | Twin-arginine translocation pathway signal. | Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate. | 0.597 |
RPD_4248 | RPD_2380 | RPD_4248 | RPD_2380 | Sulfide dehydrogenase (flavoprotein). | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | 0.925 |
RPD_4248 | RPD_4247 | RPD_4248 | RPD_4247 | Sulfide dehydrogenase (flavoprotein). | Twin-arginine translocation pathway signal. | 0.977 |
RPD_4248 | tam | RPD_4248 | RPD_3451 | Sulfide dehydrogenase (flavoprotein). | Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate. | 0.597 |
gcvP | tam | RPD_1731 | RPD_3451 | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate. | 0.403 |
tam | RPD_2380 | RPD_3451 | RPD_2380 | Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate. | FAD-dependent pyridine nucleotide-disulphide oxidoreductase. | 0.597 |
tam | RPD_3449 | RPD_3451 | RPD_3449 | Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate. | Lytic murein transglycosylase. | 0.558 |
tam | RPD_3450 | RPD_3451 | RPD_3450 | Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate. | Uncharacterized protein UPF0114. | 0.597 |
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