Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RPD_4111 | RPD_4320 | RPD_4111 | RPD_4320 | Inositol-1(or 4)-monophosphatase. | Inositol-1(or 4)-monophosphatase. | 0.926 |
RPD_4111 | nusA | RPD_4111 | RPD_0233 | Inositol-1(or 4)-monophosphatase. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.667 |
RPD_4111 | nusB | RPD_4111 | RPD_2676 | Inositol-1(or 4)-monophosphatase. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.500 |
RPD_4111 | nusG | RPD_4111 | RPD_3202 | Inositol-1(or 4)-monophosphatase. | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | 0.681 |
RPD_4111 | rpoB | RPD_4111 | RPD_3195 | Inositol-1(or 4)-monophosphatase. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.618 |
RPD_4111 | rpoC | RPD_4111 | RPD_3194 | Inositol-1(or 4)-monophosphatase. | DNA-directed RNA polymerase, subunit beta-prime; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.621 |
RPD_4111 | rpoZ | RPD_4111 | RPD_2646 | Inositol-1(or 4)-monophosphatase. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.690 |
RPD_4317 | RPD_4318 | RPD_4317 | RPD_4318 | Fructose-bisphosphate aldolase. | Thiamine monophosphate synthase. | 0.875 |
RPD_4317 | RPD_4319 | RPD_4317 | RPD_4319 | Fructose-bisphosphate aldolase. | Sel1. | 0.910 |
RPD_4317 | RPD_4320 | RPD_4317 | RPD_4320 | Fructose-bisphosphate aldolase. | Inositol-1(or 4)-monophosphatase. | 0.489 |
RPD_4318 | RPD_4317 | RPD_4318 | RPD_4317 | Thiamine monophosphate synthase. | Fructose-bisphosphate aldolase. | 0.875 |
RPD_4318 | RPD_4319 | RPD_4318 | RPD_4319 | Thiamine monophosphate synthase. | Sel1. | 0.875 |
RPD_4318 | RPD_4320 | RPD_4318 | RPD_4320 | Thiamine monophosphate synthase. | Inositol-1(or 4)-monophosphatase. | 0.520 |
RPD_4319 | RPD_4317 | RPD_4319 | RPD_4317 | Sel1. | Fructose-bisphosphate aldolase. | 0.910 |
RPD_4319 | RPD_4318 | RPD_4319 | RPD_4318 | Sel1. | Thiamine monophosphate synthase. | 0.875 |
RPD_4319 | RPD_4320 | RPD_4319 | RPD_4320 | Sel1. | Inositol-1(or 4)-monophosphatase. | 0.511 |
RPD_4320 | RPD_4111 | RPD_4320 | RPD_4111 | Inositol-1(or 4)-monophosphatase. | Inositol-1(or 4)-monophosphatase. | 0.926 |
RPD_4320 | RPD_4317 | RPD_4320 | RPD_4317 | Inositol-1(or 4)-monophosphatase. | Fructose-bisphosphate aldolase. | 0.489 |
RPD_4320 | RPD_4318 | RPD_4320 | RPD_4318 | Inositol-1(or 4)-monophosphatase. | Thiamine monophosphate synthase. | 0.520 |
RPD_4320 | RPD_4319 | RPD_4320 | RPD_4319 | Inositol-1(or 4)-monophosphatase. | Sel1. | 0.511 |
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