Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RPB_0850 | RPB_1405 | RPB_0850 | RPB_1405 | Glutamate synthase (NADPH) small chain; Sulfide dehydrogenase (flavoprotein) subunit SudA / sulfide dehydrogenase (flavoprotein) subunit SudB. | L-glutamine synthetase. | 0.946 |
RPB_0850 | RPB_2269 | RPB_0850 | RPB_2269 | Glutamate synthase (NADPH) small chain; Sulfide dehydrogenase (flavoprotein) subunit SudA / sulfide dehydrogenase (flavoprotein) subunit SudB. | L-glutamine synthetase. | 0.946 |
RPB_0850 | RPB_2558 | RPB_0850 | RPB_2558 | Glutamate synthase (NADPH) small chain; Sulfide dehydrogenase (flavoprotein) subunit SudA / sulfide dehydrogenase (flavoprotein) subunit SudB. | L-glutamine synthetase. | 0.946 |
RPB_0850 | RPB_3946 | RPB_0850 | RPB_3946 | Glutamate synthase (NADPH) small chain; Sulfide dehydrogenase (flavoprotein) subunit SudA / sulfide dehydrogenase (flavoprotein) subunit SudB. | Delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.944 |
RPB_0850 | RPB_4530 | RPB_0850 | RPB_4530 | Glutamate synthase (NADPH) small chain; Sulfide dehydrogenase (flavoprotein) subunit SudA / sulfide dehydrogenase (flavoprotein) subunit SudB. | Glutamate synthase (NADH) small subunit. | 0.986 |
RPB_0850 | RPB_4531 | RPB_0850 | RPB_4531 | Glutamate synthase (NADPH) small chain; Sulfide dehydrogenase (flavoprotein) subunit SudA / sulfide dehydrogenase (flavoprotein) subunit SudB. | Glutamate synthase (NADH) large subunit. | 0.999 |
RPB_0850 | glmS | RPB_0850 | RPB_2854 | Glutamate synthase (NADPH) small chain; Sulfide dehydrogenase (flavoprotein) subunit SudA / sulfide dehydrogenase (flavoprotein) subunit SudB. | Glutamine--fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | 0.913 |
RPB_0850 | glsA | RPB_0850 | RPB_1403 | Glutamate synthase (NADPH) small chain; Sulfide dehydrogenase (flavoprotein) subunit SudA / sulfide dehydrogenase (flavoprotein) subunit SudB. | L-glutaminase; Belongs to the glutaminase family. | 0.921 |
RPB_1405 | RPB_0850 | RPB_1405 | RPB_0850 | L-glutamine synthetase. | Glutamate synthase (NADPH) small chain; Sulfide dehydrogenase (flavoprotein) subunit SudA / sulfide dehydrogenase (flavoprotein) subunit SudB. | 0.946 |
RPB_1405 | RPB_2269 | RPB_1405 | RPB_2269 | L-glutamine synthetase. | L-glutamine synthetase. | 0.913 |
RPB_1405 | RPB_2558 | RPB_1405 | RPB_2558 | L-glutamine synthetase. | L-glutamine synthetase. | 0.913 |
RPB_1405 | RPB_3946 | RPB_1405 | RPB_3946 | L-glutamine synthetase. | Delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.936 |
RPB_1405 | RPB_4530 | RPB_1405 | RPB_4530 | L-glutamine synthetase. | Glutamate synthase (NADH) small subunit. | 0.916 |
RPB_1405 | RPB_4531 | RPB_1405 | RPB_4531 | L-glutamine synthetase. | Glutamate synthase (NADH) large subunit. | 0.972 |
RPB_1405 | glmS | RPB_1405 | RPB_2854 | L-glutamine synthetase. | Glutamine--fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | 0.918 |
RPB_1405 | glsA | RPB_1405 | RPB_1403 | L-glutamine synthetase. | L-glutaminase; Belongs to the glutaminase family. | 0.914 |
RPB_2269 | RPB_0850 | RPB_2269 | RPB_0850 | L-glutamine synthetase. | Glutamate synthase (NADPH) small chain; Sulfide dehydrogenase (flavoprotein) subunit SudA / sulfide dehydrogenase (flavoprotein) subunit SudB. | 0.946 |
RPB_2269 | RPB_1405 | RPB_2269 | RPB_1405 | L-glutamine synthetase. | L-glutamine synthetase. | 0.913 |
RPB_2269 | RPB_2558 | RPB_2269 | RPB_2558 | L-glutamine synthetase. | L-glutamine synthetase. | 0.923 |
RPB_2269 | RPB_3946 | RPB_2269 | RPB_3946 | L-glutamine synthetase. | Delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.936 |
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