Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RPB_1149 | RPB_3084 | Phenylacetic acid degradation-related protein. | Alcohol dehydrogenase superfamily, zinc-containing. | 0.586 |
RPB_2474 | RPB_3084 | Alcohol dehydrogenase, zinc-containing. | Alcohol dehydrogenase superfamily, zinc-containing. | 0.557 |
RPB_3076 | RPB_3077 | Short-chain dehydrogenase/reductase SDR. | AMP-dependent synthetase and ligase. | 0.792 |
RPB_3076 | RPB_3078 | Short-chain dehydrogenase/reductase SDR. | Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily. | 0.773 |
RPB_3076 | RPB_3079 | Short-chain dehydrogenase/reductase SDR. | Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily. | 0.773 |
RPB_3076 | RPB_3080 | Short-chain dehydrogenase/reductase SDR. | Binding-protein-dependent transport systems inner membrane component. | 0.773 |
RPB_3076 | RPB_3082 | Short-chain dehydrogenase/reductase SDR. | Twin-arginine translocation pathway signal. | 0.718 |
RPB_3076 | RPB_3083 | Short-chain dehydrogenase/reductase SDR. | Phenylacetic acid degradation-related protein. | 0.548 |
RPB_3076 | RPB_3084 | Short-chain dehydrogenase/reductase SDR. | Alcohol dehydrogenase superfamily, zinc-containing. | 0.573 |
RPB_3076 | RPB_3085 | Short-chain dehydrogenase/reductase SDR. | Hypothetical protein. | 0.454 |
RPB_3077 | RPB_3076 | AMP-dependent synthetase and ligase. | Short-chain dehydrogenase/reductase SDR. | 0.792 |
RPB_3077 | RPB_3078 | AMP-dependent synthetase and ligase. | Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily. | 0.773 |
RPB_3077 | RPB_3079 | AMP-dependent synthetase and ligase. | Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily. | 0.805 |
RPB_3077 | RPB_3080 | AMP-dependent synthetase and ligase. | Binding-protein-dependent transport systems inner membrane component. | 0.794 |
RPB_3077 | RPB_3082 | AMP-dependent synthetase and ligase. | Twin-arginine translocation pathway signal. | 0.752 |
RPB_3077 | RPB_3083 | AMP-dependent synthetase and ligase. | Phenylacetic acid degradation-related protein. | 0.696 |
RPB_3077 | RPB_3084 | AMP-dependent synthetase and ligase. | Alcohol dehydrogenase superfamily, zinc-containing. | 0.618 |
RPB_3077 | RPB_3085 | AMP-dependent synthetase and ligase. | Hypothetical protein. | 0.564 |
RPB_3078 | RPB_3076 | Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily. | Short-chain dehydrogenase/reductase SDR. | 0.773 |
RPB_3078 | RPB_3077 | Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily. | AMP-dependent synthetase and ligase. | 0.773 |
page 1 of 4