STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPB_3084Alcohol dehydrogenase superfamily, zinc-containing. (337 aa)    
Predicted Functional Partners:
RPB_3083
Phenylacetic acid degradation-related protein.
 
   0.914
RPB_3085
Hypothetical protein.
 
  
 0.646
RPB_3077
AMP-dependent synthetase and ligase.
   
 0.618
RPB_1149
Phenylacetic acid degradation-related protein.
 
   0.586
RPB_3076
Short-chain dehydrogenase/reductase SDR.
  
 
 0.573
RPB_3082
Twin-arginine translocation pathway signal.
  
    0.566
RPB_2474
Alcohol dehydrogenase, zinc-containing.
 
  
 0.557
RPB_3078
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
  
    0.531
RPB_3079
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; Belongs to the ABC transporter superfamily.
  
    0.530
RPB_3080
Binding-protein-dependent transport systems inner membrane component.
  
    0.530
Your Current Organism:
Rhodopseudomonas palustris HaA2
NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2
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