STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPB_3504Chloride peroxidase. (598 aa)    
Predicted Functional Partners:
RPB_3437
Outer membrane autotransporter.
  
  
 0.676
RPB_1634
ABC transporter related.
  
  
 0.478
RPB_2242
ABC transporter related.
  
  
 0.478
RPB_3460
Phage conserved hypothetical protein BR0599.
   
   0.475
RPB_3461
Conserved hypothetical protein.
   
   0.475
RPB_2246
VCBS.
 
 
 0.439
RPB_1275
Flagellar motor switch FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
   
 
 0.406
RPB_2894
Type I secretion outer membrane protein, TolC.
  
  
 0.400
RPB_3558
Type I secretion outer membrane protein, TolC.
  
  
 0.400
Your Current Organism:
Rhodopseudomonas palustris HaA2
NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.