STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPB_3613Cytochrome P450. (410 aa)    
Predicted Functional Partners:
RPB_3614
Ferredoxin.
 
 0.940
RPB_3583
4-hydroxybenzoate 3-monooxygenase.
 
 0.936
RPB_4656
benzoate-CoA ligase.
    
 0.906
RPB_1906
Vanillate O-demethylase oxidoreductase.
 0.848
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.778
RPB_3843
Ferredoxin.
 
 0.760
RPB_0862
Cytochrome P450-like.
 
     0.621
RPB_3615
Urea/short-chain binding protein of ABC transporter.
       0.593
RPB_4636
Cytochrome P450.
  
   
 0.570
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.561
Your Current Organism:
Rhodopseudomonas palustris HaA2
NCBI taxonomy Id: 316058
Other names: R. palustris HaA2, Rhodopseudomonas palustris str. HaA2, Rhodopseudomonas palustris strain HaA2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.