STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Geob_3329Efflux pump, RND family, membrane fusion protein. (472 aa)    
Predicted Functional Partners:
Geob_3322
ABC transporter, membrane and ATP-binding protein.
 
 0.979
Geob_0365
ABC transporter, ATP-binding/membrane protein.
 
 0.964
Geob_3326
HCBP_related repeat, He_PIG repeat and VCBS domain protein.
 
  
 0.894
Geob_3328
Glycosyltransferase, putative.
 
    0.830
Geob_3327
Radical SAM domain iron-sulfur cluster-binding oxidoreductase.
       0.774
Geob_0366
Efflux pump, RND family, outer membrane protein.
 
 
 0.719
Geob_1227
Efflux pump, RND family, outer membrane lipoprotein.
 
 
 0.648
Geob_0476
Efflux pump, RND family, outer membrane protein.
  
 
 0.617
Geob_0731
Efflux pump, RND family, outer membrane protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
 
 0.617
Geob_3395
Efflux pump, RND family, outer membrane protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
 
 0.617
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.