STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_0190Hypothetical protein; KEGG: rca:Rcas_2219 putative FHA domain containing protein. (1446 aa)    
Predicted Functional Partners:
Haur_0189
KEGG: rca:Rcas_2220 hypothetical protein.
 
     0.938
Haur_1334
Hypothetical protein; KEGG: ngo:NGO0363 putative stress-sensitive restriction system protein.
   
 0.933
Haur_0191
KEGG: rca:Rcas_2218 hypothetical protein.
 
     0.930
Haur_0188
KEGG: rca:Rcas_2221 hypothetical protein.
 
     0.922
Haur_0192
KEGG: rrs:RoseRS_2439 hypothetical protein.
 
     0.912
Haur_0619
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.905
Haur_0289
TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: rrs:RoseRS_4540 translation elongation factor G.
    
 
 0.815
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
    
 
 0.815
Haur_2539
PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: cno:NT01CX_1301 helicase, SNF2/RAD54 family, putative.
   
 0.801
Haur_4691
KEGG: rrs:RoseRS_2563 hypothetical protein.
  
 
 0.799
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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