STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_2054Conserved hypothetical protein; KEGG: ana:alr7249 unknown protein. (566 aa)    
Predicted Functional Partners:
Haur_2052
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sal:Sala_2208 transcriptional regulator, XRE family.
       0.773
Haur_2053
Hypothetical protein.
       0.773
Haur_1127
PFAM: transposase IS4 family protein; KEGG: plu:plu4276 transposase, IS982 family.
 
     0.532
Haur_1938
PFAM: transposase IS4 family protein; KEGG: wol:WD0563 transposase, IS4 family.
  
     0.531
Haur_0103
PFAM: WD-40 repeat protein; SMART: AAA ATPase; KEGG: gvi:gll4356 WD-repeat protein.
  
     0.459
Haur_4150
PFAM: GCN5-related N-acetyltransferase; KEGG: rrs:RoseRS_3838 GCN5-related N-acetyltransferase.
  
     0.455
Haur_2039
PFAM: transposase IS4 family protein; KEGG: rca:Rcas_0411 transposase IS4 family protein.
 
     0.422
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.