STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_2379KEGG: dge:Dgeo_0294 hypothetical protein. (129 aa)    
Predicted Functional Partners:
Haur_2183
KEGG: fps:FP0936 probable transmembrane protein precursor.
  
     0.691
Haur_2182
KEGG: fps:FP0937 hypothetical protein.
  
     0.670
Haur_2181
KEGG: fps:FP0938 probable glycosyl hydrolase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.612
Haur_2185
PFAM: glycosyl transferase group 1; KEGG: fps:FP0939 glycosyl transferase, group 1 family protein.
  
    0.571
Haur_2380
Hypothetical protein.
       0.537
Haur_0760
KEGG: aba:Acid345_4612 hypothetical protein.
  
     0.504
Haur_2377
KEGG: rrs:RoseRS_3861 hypothetical protein.
       0.473
Haur_2378
PFAM: O-antigen polymerase; KEGG: rca:Rcas_2722 O-antigen polymerase.
       0.473
Haur_0353
KEGG: dra:DR_2326 hypothetical protein.
  
     0.450
Haur_2190
KEGG: aba:Acid345_4612 hypothetical protein.
  
     0.407
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.