STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_3117PFAM: protein of unknown function DUF95 transmembrane; KEGG: rrs:RoseRS_1285 protein of unknown function DUF95, transmembrane. (760 aa)    
Predicted Functional Partners:
Haur_3116
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_1284 ABC transporter related.
 
     0.894
Haur_0190
Hypothetical protein; KEGG: rca:Rcas_2219 putative FHA domain containing protein.
  
     0.771
Haur_3144
KEGG: rrs:RoseRS_0323 hypothetical protein.
  
     0.768
Haur_2538
PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_0532 tetratricopeptide TPR_4.
  
    0.767
Haur_0090
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_3987 tetratricopeptide TPR_2 repeat protein.
  
     0.765
Haur_4222
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_0032 TPR repeat-containing protein.
  
     0.763
Haur_4116
PFAM: transferase hexapeptide repeat containing protein; KEGG: rca:Rcas_0803 N-acetylglucosamine-1-phosphate uridyltransferase-like protein.
  
   
 0.762
Haur_0930
KEGG: rrs:RoseRS_0201 hypothetical protein.
  
     0.757
Haur_2360
KEGG: rrs:RoseRS_3483 hypothetical protein.
  
     0.753
Haur_4114
KEGG: rca:Rcas_0805 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
     0.752
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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