STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_4010KEGG: rca:Rcas_3036 hypothetical protein. (443 aa)    
Predicted Functional Partners:
Haur_4012
KEGG: rrs:RoseRS_2061 hypothetical protein.
 
     0.892
Haur_3445
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO5647 ABC transporter integral membrane protein.
  
     0.587
Haur_0261
TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; PFAM: extracellular solute-binding protein family 1; KEGG: sco:SCO5646 putative solute binding lipoprotein.
  
     0.582
Haur_4011
PFAM: YCII-related; KEGG: sth:STH1648 hypothetical protein.
       0.566
Haur_4743
PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1957; KEGG: rca:Rcas_1501 domain of unknown function DUF1957; Belongs to the glycosyl hydrolase 57 family.
  
     0.541
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
   
 0.526
Haur_4009
PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_3665 glycosyl transferase group 1.
       0.524
hpf
Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
   
  
 0.507
Haur_1529
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: yen:YE0810 L-sorbose 1-phosphate reductase.
 
  
 0.487
Haur_4461
PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1957; KEGG: pfu:PF1393 hypothetical protein; Belongs to the glycosyl hydrolase 57 family.
  
     0.412
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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