STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vasQ-1Putative type VI secretion protein VasQ-1; Operon structure similar to Rhizobium leguminosarum bv. trifolii operon harbouring putative temperature-dependent protein secretion proteins (169 aa)    
Predicted Functional Partners:
vasRA-1
Putative type VI secretion protein VasRA-1; Operon structure similar to Rhizobium leguminosarum bv. trifolii operon harbouring putative temperature-dependent protein secretion proteins
 
 0.991
vasRB-1
Putative type VI secretion protein VasRB-1; Operon structure similar to Rhizobium leguminosarum bv. trifolii operon harbouring putative temperature-dependent protein secretion proteins
 
 0.965
vasR
annotation not available
 
 0.952
vasA-1
Putative type VI secretion protein VasA-1; Operon structure similar to Rhizobium leguminosarum bv. trifolii operon harbouring putative temperature-dependent protein secretion proteins
 
  
 0.938
vasB-1
annotation not available
 
  
 0.929
vasG-1
annotation not available
 
  
 0.910
vasE-1
Putative type VI secretion protein VasE-1; Operon structure similar to Rhizobium leguminosarum bv. trifolii operon harbouring putative temperature-dependent protein secretion proteins
 
  
 0.884
vasF-1
annotation not available
 
  
 0.873
vasJ-1
Putative type VI secretion protein VasJ-1; Weakly similar to Rhizobium leguminosarum bv. trifolii ImpA UniProt:Q93ED3 (358 aa) fasta scores: E()=0.0033, 23.618% id in 398 aa. Operon structure similar to Rhizobium leguminosarum bv. trifolii operon harbouring putative temperature-dependent protein secretion proteins. Expression may be regulated by Fur
 
  
 0.865
vasD-1
annotation not available
 
  
 0.854
Your Current Organism:
Aliivibrio salmonicida
NCBI taxonomy Id: 316275
Other names: A. salmonicida LFI1238, Aliivibrio salmonicida, Aliivibrio salmonicida LFI1238, Aliivibrio salmonicida str. LFI1238, Aliivibrio salmonicida strain LFI1238, Vibrio salmonicida LFI1238
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