STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAK27490.1Uncharacterized conserved secreted protein. (436 aa)    
Predicted Functional Partners:
CAK27816.1
Uncharacterized protein wiht hemolysin-type calcium-binding regions; Possible secreted protein, possibly specific to RCC307 (compositional bias, mask the G residues in protein sequence before blast search); Belongs to the peptidase S8 family.
  
 
 0.675
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
 
 0.653
CAK27491.1
Uncharacterized conserved secreted protein.
       0.645
CAK29269.1
Uncharacterized conserved membrane protein.
    
 
 0.642
ctp
Carboxyl-terminal processing protease; Cell envelope biogenesis, outer membrane; Belongs to the peptidase S41A family.
   
   0.454
ctpA
Carboxyl-terminal processing protease; Cell envelope biogenesis, outer membrane; Belongs to the peptidase S41A family.
   
   0.454
lepB
Signal peptidase I; Intracellular trafficking and secretion; Belongs to the peptidase S26 family.
     
 0.413
CAK27489.1
Predicted membrane metal-binding protein.
       0.412
CAK28825.1
Gluconolactonase; Carbohydrate transport and metabolism.
     
 0.407
Your Current Organism:
Synechococcus sp. RCC307
NCBI taxonomy Id: 316278
Other names: S. sp. RCC307, Synechococcus sp. MINSyn016-15m-01 substr. AC6A1
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