Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CAK27317.1 | rbcL, | SynRCC307_0414 | SynRCC307_0819 | Predicted HAD superfamily phosphatase. | Ribulose bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | 0.907 |
| CAK27317.1 | rbcS, | SynRCC307_0414 | SynRCC307_0820 | Predicted HAD superfamily phosphatase. | Ribulose bisphosphate carboxylase small subunit; Carbohydrate transport and metabolism. | 0.910 |
| CAK27345.1 | mtnD | SynRCC307_0442 | SynRCC307_0459 | Hydrolase, haloacid dehalogenase-like. | ARD/ARD' family protein (methionine salvage pathway); Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway. | 0.986 |
| CAK27345.1 | rbcL, | SynRCC307_0442 | SynRCC307_0819 | Hydrolase, haloacid dehalogenase-like. | Ribulose bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | 0.842 |
| CAK27388.1 | pgk, | SynRCC307_0485 | SynRCC307_2229 | Predicted kinase. | Phosphoglycerate kinase; Carbohydrate transport and metabolism; Belongs to the phosphoglycerate kinase family. | 0.816 |
| CAK27388.1 | prk | SynRCC307_0485 | SynRCC307_0996 | Predicted kinase. | Phosphoribulokinase; Energy production and conversion. | 0.800 |
| CAK27388.1 | rbcL, | SynRCC307_0485 | SynRCC307_0819 | Predicted kinase. | Ribulose bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | 0.900 |
| CAK27388.1 | rbcS, | SynRCC307_0485 | SynRCC307_0820 | Predicted kinase. | Ribulose bisphosphate carboxylase small subunit; Carbohydrate transport and metabolism. | 0.900 |
| csoS1/ccmK1 | csoS2 | SynRCC307_0818 | SynRCC307_0821 | Carboxysome shell peptide. | Carboxysome shell polypeptide, CsoS2. | 0.653 |
| csoS1/ccmK1 | rbcL, | SynRCC307_0818 | SynRCC307_0819 | Carboxysome shell peptide. | Ribulose bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | 0.844 |
| csoS1/ccmK1 | rbcS, | SynRCC307_0818 | SynRCC307_0820 | Carboxysome shell peptide. | Ribulose bisphosphate carboxylase small subunit; Carbohydrate transport and metabolism. | 0.808 |
| csoS2 | csoS1/ccmK1 | SynRCC307_0821 | SynRCC307_0818 | Carboxysome shell polypeptide, CsoS2. | Carboxysome shell peptide. | 0.653 |
| csoS2 | rbcL, | SynRCC307_0821 | SynRCC307_0819 | Carboxysome shell polypeptide, CsoS2. | Ribulose bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | 0.732 |
| csoS2 | rbcS, | SynRCC307_0821 | SynRCC307_0820 | Carboxysome shell polypeptide, CsoS2. | Ribulose bisphosphate carboxylase small subunit; Carbohydrate transport and metabolism. | 0.854 |
| mtnD | CAK27345.1 | SynRCC307_0459 | SynRCC307_0442 | ARD/ARD' family protein (methionine salvage pathway); Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway. | Hydrolase, haloacid dehalogenase-like. | 0.986 |
| mtnD | rbcL, | SynRCC307_0459 | SynRCC307_0819 | ARD/ARD' family protein (methionine salvage pathway); Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway. | Ribulose bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | 0.822 |
| paaY | rbcL, | SynRCC307_1539 | SynRCC307_0819 | Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily; Inorganic ion transport and metabolism. | Ribulose bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | 0.784 |
| paaY | rbcS, | SynRCC307_1539 | SynRCC307_0820 | Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily; Inorganic ion transport and metabolism. | Ribulose bisphosphate carboxylase small subunit; Carbohydrate transport and metabolism. | 0.711 |
| pgk, | CAK27388.1 | SynRCC307_2229 | SynRCC307_0485 | Phosphoglycerate kinase; Carbohydrate transport and metabolism; Belongs to the phosphoglycerate kinase family. | Predicted kinase. | 0.816 |
| pgk, | rbcL, | SynRCC307_2229 | SynRCC307_0819 | Phosphoglycerate kinase; Carbohydrate transport and metabolism; Belongs to the phosphoglycerate kinase family. | Ribulose bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | 0.913 |
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