STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmFOGid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. (460 aa)    
Predicted Functional Partners:
ABB26357.1
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.624
psbY-2
Hypothetical protein; Manganese-binding polypeptide with L-arginine metabolizing enzyme activity. Component of the core of photosystem II. Belongs to the PsbY family.
       0.624
ABB25399.1
Putative RNA methylase family UPF0020; Belongs to the methyltransferase superfamily.
   
    0.452
ABB26387.1
Carotenoid isomerase.
       0.446
ABB26391.1
Possible carbonic anhydrase.
       0.446
ABB26388.1
Putative cation efflux transporter (CDF family).
       0.442
Your Current Organism:
Synechococcus sp. CC9902
NCBI taxonomy Id: 316279
Other names: S. sp. CC9902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.