Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABB26160.1 | ABB26991.1 | Syncc9902_1196 | Syncc9902_2033 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.692 |
ABB26160.1 | dapL | Syncc9902_1196 | Syncc9902_2031 | Conserved hypothetical protein. | Aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | 0.418 |
ABB26974.1 | ABB26992.1 | Syncc9902_2016 | Syncc9902_2034 | Glutamate synthase (ferredoxin). | TPR repeat. | 0.541 |
ABB26974.1 | dapB | Syncc9902_2016 | Syncc9902_0826 | Glutamate synthase (ferredoxin). | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. | 0.422 |
ABB26974.1 | dapF | Syncc9902_2016 | Syncc9902_1107 | Glutamate synthase (ferredoxin). | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.683 |
ABB26974.1 | dapL | Syncc9902_2016 | Syncc9902_2031 | Glutamate synthase (ferredoxin). | Aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | 0.664 |
ABB26974.1 | nadE | Syncc9902_2016 | Syncc9902_0495 | Glutamate synthase (ferredoxin). | NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.419 |
ABB26988.1 | ABB26991.1 | Syncc9902_2030 | Syncc9902_2033 | Elongator protein 3/MiaB/NifB. | Conserved hypothetical protein. | 0.556 |
ABB26988.1 | ABB26992.1 | Syncc9902_2030 | Syncc9902_2034 | Elongator protein 3/MiaB/NifB. | TPR repeat. | 0.553 |
ABB26988.1 | clpS | Syncc9902_2030 | Syncc9902_2032 | Elongator protein 3/MiaB/NifB. | Conserved hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.479 |
ABB26988.1 | dapL | Syncc9902_2030 | Syncc9902_2031 | Elongator protein 3/MiaB/NifB. | Aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | 0.636 |
ABB26991.1 | ABB26160.1 | Syncc9902_2033 | Syncc9902_1196 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.692 |
ABB26991.1 | ABB26988.1 | Syncc9902_2033 | Syncc9902_2030 | Conserved hypothetical protein. | Elongator protein 3/MiaB/NifB. | 0.556 |
ABB26991.1 | ABB26992.1 | Syncc9902_2033 | Syncc9902_2034 | Conserved hypothetical protein. | TPR repeat. | 0.725 |
ABB26991.1 | clpS | Syncc9902_2033 | Syncc9902_2032 | Conserved hypothetical protein. | Conserved hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.820 |
ABB26991.1 | dapL | Syncc9902_2033 | Syncc9902_2031 | Conserved hypothetical protein. | Aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | 0.635 |
ABB26992.1 | ABB26974.1 | Syncc9902_2034 | Syncc9902_2016 | TPR repeat. | Glutamate synthase (ferredoxin). | 0.541 |
ABB26992.1 | ABB26988.1 | Syncc9902_2034 | Syncc9902_2030 | TPR repeat. | Elongator protein 3/MiaB/NifB. | 0.553 |
ABB26992.1 | ABB26991.1 | Syncc9902_2034 | Syncc9902_2033 | TPR repeat. | Conserved hypothetical protein. | 0.725 |
ABB26992.1 | clpS | Syncc9902_2034 | Syncc9902_2032 | TPR repeat. | Conserved hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.683 |
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