Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABB27274.1 | ABB27276.1 | Syncc9902_2316 | Syncc9902_2318 | Conserved hypothetical protein. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.562 |
ABB27274.1 | ABB27277.1 | Syncc9902_2316 | Syncc9902_2319 | Conserved hypothetical protein. | Possible protein kinase. | 0.409 |
ABB27274.1 | ABB27278.1 | Syncc9902_2316 | Syncc9902_2320 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.745 |
ABB27274.1 | uvrA | Syncc9902_2316 | Syncc9902_2317 | Conserved hypothetical protein. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.781 |
ABB27276.1 | ABB27274.1 | Syncc9902_2318 | Syncc9902_2316 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Conserved hypothetical protein. | 0.562 |
ABB27276.1 | ABB27277.1 | Syncc9902_2318 | Syncc9902_2319 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Possible protein kinase. | 0.608 |
ABB27276.1 | ABB27278.1 | Syncc9902_2318 | Syncc9902_2320 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Conserved hypothetical protein. | 0.500 |
ABB27276.1 | ABB27279.1 | Syncc9902_2318 | Syncc9902_2321 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | L-threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. | 0.433 |
ABB27276.1 | uvrA | Syncc9902_2318 | Syncc9902_2317 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.768 |
ABB27277.1 | ABB27274.1 | Syncc9902_2319 | Syncc9902_2316 | Possible protein kinase. | Conserved hypothetical protein. | 0.409 |
ABB27277.1 | ABB27276.1 | Syncc9902_2319 | Syncc9902_2318 | Possible protein kinase. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.608 |
ABB27277.1 | ABB27278.1 | Syncc9902_2319 | Syncc9902_2320 | Possible protein kinase. | Conserved hypothetical protein. | 0.693 |
ABB27277.1 | ABB27279.1 | Syncc9902_2319 | Syncc9902_2321 | Possible protein kinase. | L-threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. | 0.575 |
ABB27277.1 | uvrA | Syncc9902_2319 | Syncc9902_2317 | Possible protein kinase. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.473 |
ABB27278.1 | ABB27274.1 | Syncc9902_2320 | Syncc9902_2316 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.745 |
ABB27278.1 | ABB27276.1 | Syncc9902_2320 | Syncc9902_2318 | Conserved hypothetical protein. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.500 |
ABB27278.1 | ABB27277.1 | Syncc9902_2320 | Syncc9902_2319 | Conserved hypothetical protein. | Possible protein kinase. | 0.693 |
ABB27278.1 | ABB27279.1 | Syncc9902_2320 | Syncc9902_2321 | Conserved hypothetical protein. | L-threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. | 0.618 |
ABB27279.1 | ABB27276.1 | Syncc9902_2321 | Syncc9902_2318 | L-threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.433 |
ABB27279.1 | ABB27277.1 | Syncc9902_2321 | Syncc9902_2319 | L-threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. | Possible protein kinase. | 0.575 |
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